v.4.22.08

AGRONOMY 517 SYLLABUS for  2008

INTRODUCTION:  THE COURSE APPROACH

UNIT 1:  THE NATURE OF WEEDS
1  The Nature of Weeds                                                                                                                      

   
     1.1  Definitions of a weed                                                                                             
                1.1.1  Other terminology
                1.1.2  Other weed definitions
                1.1.3  Weeds defined by their traits
                1.1.4  The "ideal weed" concept
                1.1.5  Adaptive characteristics of agronomic weeds

UNIT 2:  WEED EVOLUTION
2  Natural Selection
   
     2.1  Definitions
        2.2  Preconditions for natural selection
        2.3  Four conditions for natural selection                                                                       
                2.3.1  Reproduction                                                                                          
                2.3.2  Heredity and inheritance                                                             
                2.3.3  Variation in fitness of organisms 
                2.3.4  Variation in individuals and traits                                                 
                        2.3.4.1  Units of selection
                        2.3.4.2  Genotypes and phenotypes
                        2.3.4.3  Epigenesis
                        2.3.4.4  Weed Biodiversity
                                2.3.4.4.1  Definitions
                                2.3.4.4.2  Biodiversity levels within a habitat                                    
                        2.3.4.5  Genetic Variation
                                2.3.4.5.1  Sources of genetic diversity
                                2.3.4.5.2  Forces increasing population diversity
                                2.3.4.5.3  Forces decreasing population diversity
                                2.3.4.5.4  Levels of weedy biodiversity within a habitat
                        2.3.4.6  Phenotypic Variation
                                2.3.4.6.1  Phenotypic plasticity
                                2.3.4.6.2  Somatic polymorphism
                                2.3.4.6.3  Phenotypic traits and weed life history
                                        -Phenotypic life history traits
                                        -Plant morphology, development and activity during life history
                                        -Preadaptation
                                        -Trait basis of the invasion process
                                        -Life history trait lists: birth, dispersal, recruitment, vegetative growth, reproductive growth
                        2.3.4.7  Mating system variation
                                2.3.4.7.1  Apomicts
                                2.3.4.7.2  Self-pollinating species
                                2.3.4.7.3  Out-crossing species
                                2.3.4.7.4  Dioecious species                             

3  Weedy Adaptation:  Micro- and Macro-Evolution  
   
     3.1  Adaptation
        3.2  Micro-evolution   
                3.2.1  Weed population shifts
                        3.2.1.1  Inter-specific weed population shifts
                        3.2.1.2  Intra-specific weed population shifts
                        3.2.1.3  Non-herbicide population shifts
                        3.2.1.4  Herbicide-induced population shifts
        3.3  Macro-Evolution
                3.3.1  Definitions
                3.3.2  Speciation
                        3.3.2.1  Process of speciation
                        3.3.2.2  Reproductive isolating mechanisms
                        3.3.2.3  Two dimension of evolution
                        3.3.2.4  Modes of speciation

4  Weedy Adaptation:  Evolutionary Strategies for Weedy Colonization 
       
4.1  The origin of weeds:  Wild-crop-weed plant complexes
        4.2  Colonizing preadaptive archetypes 
               
4.2.1  Generalist-specialist genotypes
                4.2.2  Reproductive colonizing types
        4.3  Genetic structuring of species associations for colonization
                4.3.1  Species-groups
                4.3.2  Polyploid species clusters
        4.4  Genomic structure and weediness

UNIT 3:  AGRICULTURAL COMMUNITY DYNAMICS                                               
5  Opportunity Space                                                                                                 
            5.1  Local opportunity:  space and time
            5.2  Weedy habitats
            5.3  Niches in the local community
                    5.3.1  Definitions
                    5.3.2  The niche hypervolume
                            5.3.2.1  Diversity of community structure dependent on spatial heterogeneity and patchiness
                                    5.3.2.1.1  Selection in a patchy environment
                                    5.3.2.1.2  Dispersal mechanisms set the scale of a plant's spatial heterogeneity
                                    5.3.2.1.3  Lateral heterogeneity of environments
                                    5.3.2.1.4  Vertical heterogeneity of environments
                            5.3.2.2  Diversity of community structure dependent on the temporal division of the environment
                            5.3.2.3  Diversity of community structure dependent on the differential use of resources and conditions
                                    5.3.2.3.1  Limiting resources in the environment
                                            5.3.2.3.1.1  Introductory concepts
                                            5.3.2.3.1.2  Light as a resource factor
                                            5.3.2.3.1.3  Water as a consumable resource
                                            5.3.2.3.1.4  Mineral nutrients as resource factors
                                            5.3.2.3.1.5  Gases as limiting resource factors
                                                    5.3.2.3.1.5.1  Carbon dioxide
                                                    5.3.2.3.1.5.2  Oxygen
                                    5.3.2.3.2  Pervasive conditions in the environment
                                            5.3.2.3.2.1  Temperature
                                            5.3.2.3.2.2  Others

  6  Disturbance                                                                                                                        51
            6.1  Disturbance: local opportunity
            6.2  Dimensionality of disturbance
            6.3  Proximity of disturbance effects
            6.4  Vulnerability to disturbance  
            6.5  Temporal patterns in disturbance
                    -Catastrophes
                    -Crashes
                    -Cycles

7  Plant Invasions
   
         7.1  Introduction
            7.2  Plant invasion in a nutshell
            7.3  The plant invasion process:  Dispersal, colonization, enduring occupation and extinction
                        7.3.1  The invasion matrix
                        7.3.2  Invasion is community and speciation
                       
7.3.3  Dispersal
                        7.3.4  Colonization
                        7.3.5  Enduring occupation of a locality
                        7.3.6  Extinction
            7.4  The perception of plant invasion
                        7.4.1  Human values
                        7.4.2  Conclusions
                                7.4.2.1  The human role in creating opportunity space for plant invasion
                                7.4.2.2  Utilizing and exploiting beneficial plant invasive species

8  Plant Community Structure
           
8.1  Introduction
            8.2  Stability in plant communities
            8.3  Population genetic structure and opportunity space
                    8.3.1  Case study:  The weedy Setaria species-group
                    8.3.1.1  Genetic diversity in the weedy foxtails
                    8.3.1.2  Genetic pattern of colonization and regional differentiation
                    8.3.1.3  Genetic variation and evolutionary success in colonizers
            8.4  Mating systems and population genetic structure
                    8.4.1  Mating systems and disturbance
            8.5  Plant community ecological succession
            8.6  Ecological roles, guilds or trades in weed-crop plant community structure and assembly
                    8.6.1  Definitions
                    8.6.2  Guild structure and community organization
                    8.6.3  Parameters of weed species ecological role and niche
                    8.6.4  Trait guild:  Relative seedling/bud emergence order
                    8.6.5  Weed trait guilds

UNIT 4:  WEED LIFE HISTORY                                                                                        
9  The Seed life history:  Seed to seedling
   
         9.1  Seed/propagule dormancy and germinability
                    9.1.1  Introduction
                    9.1.2  The birth of the plant
                    9.1.3  Definitions
                    9.1.4  Life history of the seed
                    9.1.5  The evolutionary and ecological basis for seed dormancy
                    9.1.6  Variability and somatic polymorphism in weed seed dormancy
                            9.1.6.1  Definition
                            9.1.6.2  Evolutionary ecology of heterblasty
                            9.1.6.3  Examples of weed species heteroblasty
                     9.1.7  Observational categories of seed dormancy mechanisms
                            9.1.7.1  Non-dormant
                            9.1.7.2  Vegetative, non-perenating buds
                            9.1.7.3  Hard seed coats
                            9.1.7.4  Light and nitrate stimulated soil surface germination
                            9.1.7.5  Oxygen regulated germination and after-ripening: oxygen exclusion
                            9.1.7.6  Other dormancy mechanisms
                    9.1.8  Beware of the seed dormancy literature
                    9.1.9  Summary
            9.2  Seed and propagule dispersal:  The seed rain
                    9.2.1  Introduction
                    9.2.2  The evolutionary ecology of dispersal
                            9.2.2.1  Seed trade-offs
                            9.2.2.2  Cost of dispersal
                    
9.2.3  Space-time dimensions of dispersal
                            9.2.3.1  Spatial dispersal
                            9.2.3.2  Temporal dispersal
                    9.2.4  The process of dispersal
                            9.2.4.1  Dispersal and post-dispersal
                            9.2.4.2  Seed flux at a locality
                    9.2.5  Modes of seed and propagule dispersal
                            9.2.5.1  Gravity
                            9.2.5.2  Wind and air
                            9.2.5.3  Water
                            9.2.5.4  Animal, non-human
                            9.2.5.5  Human
                            9.2.5.6  Other miscellaneous types
            9.3  Soil seed and propagule pool formation
                            9.3.1  Introduction
                            9.3.2  Seed states and processes in the soil pool
                                    9.3.2.1  Seed states and fates
                                    9.3.2.2  Seed state transition processes
                            9.3.3  Population dynamics in the soil seed pool
                                    9.3.3.1  Additions to the seed pool
                                    9.3.3.2  Losses from the seed pool
                                    9.3.3.3  Continuity in the seed pool with time
                            9.3.4  Structure of soil seed pools
                                    9.3.4.1  Spatial distribution in the soil profile
                                    9.3.4.2  Floral seed community composition
                                    9.3.4.3  Seed pool size
                                    9.3.4.4  Seed longevity in the soil
           9.4  Seedling emergence and establishment:  Recruitment
                    9.4.1  The process of recruitment
                    9.4.2  Favorable germination micro-sites
                    9.4.3  Patterns of seedling emergence

  10  The vegetative plant:  Seedling to flowering plant                                                         
            10.1  Plant density, plant form and community diversity
                    10.1.1  Influences of plant density on growth and yield
                            10.1.1.1  Density-yield response
                            10.1.1.2  Plant-to-plant variation
                    10.1.2  Influences of plant density on mortality
                    10.1.3  Influences of plant density on form and reproduction
                            10.1.3.1  Plant form and diversity of community
                            10.1.3.2  Phenotypic plasticity and somatic polymorphism 
            10.2  Forces of selection acting on plant community dynamics and competition
                    10.2.1  Biological categories of selection
                            10.2.1.1  r and K selection
                            10.2.1.2  Ecological combining ability
                            10.2.1.3  Selection by the activity of predators and pathogens
                            10.2.1.4  The evolutionary consequences of disturbance
                            10.2.1.5  Selection in a spatially patchy environment
                    10.2.2  Maximizing fitness in a variable environment
                    10.2.3  Biodiversity, complexity and community stability
            10.3  Mechanisms of interaction between neighbors in the agricultural community
                    10.3.1  Interference
                    10.3.2  Coexistence, cohabitation and synergism
                    10.3.3  Modify the environment
                    10.3.4  Experimental characterization of weed-crop interactions

11  The reproductive plant:  Flowering plant to parental abscission
            11.1  Reproduction, mortality and life history timing of reproduction
                    11.1.1  Trade-offs in reproduction
                            11.1.1.1  Principle of strategic allocation
                            11.1.1.2  Life history trade-offs
                            11.1.1.3  Timing of life history trade-offs
                    11.1.2  Reproduction and mortality
                    11.1.3  Timing of reproduction
                    11.1.4  Reproductive value
                    11.1.5  Risk of death
                    11.1.6  Age states
            11.2  Reproduction and seed trade-offs
                    11.2.1  Seed number
                    11.2.2  Seed size
                            11.2.2.1  Seed size plasticity and stability in a species
                            11.2.2.2  Variable seed size
                            11.2.2.3  Relationship of seed size to habitat
                            11.2.2.4  Small seed size
                            11.2.2.5  Relative size of seed produced by a species
                            11.2.2.6  Seed weight variation between plant species
                    11.2.3  Seed size and number variation and trade-offs
                    11.2.4  The five roles of seeds
                    11.2.5  Trade-offs among seed roles
                    11.2.6  Weed examples

  Conclusion: John Harper      


Archetype weed species: Life history, traits and identification

Glossary


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