Spatial variation of carbon stocks within peatlands is an overall challenge for monitoring global carbon cycle processes, which is critical for responding to climate change induced by greenhouse gases. The objective of this study was to evaluate the ability of high-resolution, minimally invasive sensor data to predict spatial variation of soil organic carbon stocks within highly degraded peatland soils in northeast Germany. Within the Rhin-Havelluch, a paludification mire that has been cultivated and drained for about 300 years, seven fields were sampled by soil cores up to 2 m in depth, nine points for each field. Soil horizons were examined for dry bulk density, soil organic carbon content, and thickness to calculate soil organic carbon stocks and to test for relationships with overall peat thickness, elevation, and electrical conductivity (ECa). Elevation was determined by LiDAR and electrical conductivity by an EM38DD, both producing maps of high resolution (1 m).