Publications

81

Sivakumar Swaminathan, Nilwala S. Abeysekara, Joshua M. Knight, Min Liu, Jia Dong, Matthew E. Hudson, Madan K. Bhattacharyya, Silvia R. Cianzio (2018) Mapping of new quantitative trait loci for sudden death syndrome and soybean cyst nematode resistance in two soybean population. Theor. Appl. Genet. in press.

  
80

Bing Wang, Rishi Sumit, Binod B. Sahu, Micheline Ngaki, Subodh K. Srivastava, Yang Yang, Sivakumar Swaminathan, Madan K. Bhattacharyya (2018) Arabidopsis novel glycine-rich plasma membrane PSS1 protein enhances disease resistance in transgenic
soybean plants.
Plant Physiology 176:865-878.

  
79

Devinder Sandhu, Jayadri Ghosh, Callie Johnson, Jordan Baumbach, Eric Baumert, Tyler Cina, David Grant, Reid G. Palmer, Madan K. Bhattacharyya (2017) The endogenous transposable element Tgm9 is suitable for generating knockout mutants for functional analyses of soybean genes and genetic improvement in soybean. PLoS ONE 12(1): e0169963.

  
78

Jill Marshall, Xuan Qiao, Jordan Baumbach1, Jingyu Xie, Liang Dong,Madan K. Bhattacharyya (2017) Microfluidic device enabled quantitative time-lapse microscopic-photography for phenotyping vegetative and reproductive phases in Fusarium virguliforme, which is pathogenic to soybean. Scientific Reports 7:443650.

  
77

Dipak K. Sahoo, Nilwala S. Abeysekara, Silvia R. Cianzio,
Alison E. Robertson,
Madan K. Bhattacharyya (2017) A novel Phytophthora resistance gene, Rps12 mapped tightly to the Rps4/6 region in soybean.
PLoS One, 12:e0169950.

  
76

Binod B. Sahu, Jordan Baumbach, Prashant Singh, Subodh Srivastava, Xioping Yi, Madan K. Bhattacharyya (2017) Investigation of the Fusarium virguliforme transcriptomes induced during infection of soybean roots suggests that enzymes with hydrolytic activities could play a major role in root necrosis. PloS One, 12:e0169963.

  
75

Noore A. Abdelsamad, Jordan Baumbach, Madan K. Bhattacharyya, Leonor F. Leandro (2016) Soybean sudden death syndrome caused by Fusarium virguliforme is impaired by prolonged flooding and anaerobic conditions. Plant Disease, http://dx.doi.org/10.1094/PDIS-04-16-0534-RE.

  
74

Micheline N. Ngaki, Bing Wang, Binod B. Sahu, Subodh Srivastava, Mohammad S. Farooq, Sekhar Kambakam, Swaminathan Sivakumar, Madan K. Bhattacharyya (2016) Transcriptomic Study of the soybean-Fusarium virguliforme interaction revealed a novel ankyrin-repeat containing defense gene, expression of whose during infection led to enhanced resistance to the fungal pathogen in transgenic soybean plants. PloS One, 11:e0163106.

  
73

Xiaoqiu Huang, Anindya Das, Binod B. Sahu, Subodh K. Srivastava, Leonor F. Leandro, Kerry O’Donnell, Madan K. Bhattacharyya (2016) Identification of highly variable supernumerary chromosome segments in an asexual pathogen. PLoS ONE 11(6): e0158183. doi:10.1371/journal.pone.015818.

  
72

Nilwala S. Abeysekara, Rashelle L. Matthiesen, Silvia R. Cianzio,
Madan K. Bhattacharyya, and Alison E. Robertson (2016)
The novel sources of partial resistance against Phytophthora sojae in soybean PI 399036. Crop Sci. 56:1–14.

  
71

Zhen Xu, Huawei Jiang, Binod Bihari Sahu, Sekhar Kambakam, Prashant Singh, Xinran Wang, Qiugu Wang, Madan K. Bhattacharyya, and Liang Dong (2016) Humidity assay for studying plant-pathogen interactions in miniature controlled discrete humidity environments with good throughput. Biomicrofluidics 10, 034108 (2016); doi: 10.1063/1.4950998.

  
70

Cianzio, S.R., P. Lundeen, M. K. Bhattacharyya, S. Swaminathan, G. Gebhart, and N. Rivera-Velez. (2016) Registration of AR11SDS Soybean Germplasm Resistant to Sudden Death Syndrome, Soybean Cyst Nematode, and with Moderate Iron Deficiency Chlorosis Scores. Journal of Plant Registrations 10:177–188.

  
69

Min Liu, Shuxian Li, Sivakumar Swaminathan, Binod B. Sahu, Leonor F. Leandro, Andrea J. Cardinal, Madan K. Bhattacharyya, Qijian Song, David R. Walker, and Silvia R. Cianzio (2016) Identification of a soybean rust resistance gene in PI 567104B. Theor. Appl. Genet. 129:863–877.

  
68

Jordan Baumbach, Ramesh N. Pudake, Callie Johnson, Kaylin Kleinhans,
Alexandrea Ollhoff, Reid G. Palmer, Madan K. Bhattacharyya, Devinder Sandhu (2016)
Transposon tagging of a male-sterility, female-sterility gene, st8, revealed that the meiotic MER3 DNA helicase activity is essential for fertility in soybean. PLoS ONE 11(3): e0150482. doi:10.1371/
journal.pone.0150482

  
67

Bailin Zhang, Bing Wang, Andres W. Morales, Jonathan Scudder† Madan K. Bhattacharyya, and Jing Yong Ye (2016) Study of the interactions of Fusarium virguliforme toxin FvTox1 with synthetic peptides by molecular simulations and a label-free biosensor. Analytical Chemistry: DOI: 10.1021/acs.analchem.5b02442

  
66

Abeysekara, N.S., Desai, N., Guo, L., and Bhattacharyya, M.K. (2015) The Plant immunity inducer pipecolic acid accumulates in the xylem sap and leaves of soybean seedlings following Fusarium virguliforme infection. Plant Science 243:105�114.

  
65

Wang, B., Zhang, B, Ye, J.Y., and Bhattacharyya, M.K. (2015) Identification of Fusarium virguliforme FvTox1- interacting synthetic peptides for enhancing foliar sudden death syndrome resistance in soybean. PLoS ONE 10(12): e0145156. doi:10.1371/
journal.pone.0145156

  
64

Swaminathan, S., Abeysekara, N.S., Liu, M, Cianzio, C.R. and Bhattacharyya, M.K. (2015) Identification of quantitative trait loci underlying the sensitivity of soybean to the Fusarium virguliforme toxins that induce foliar soybean sudden death syndrome in soybean. Theor Appl Genet DOI 10.1007/s00122-015-2643-5.

  
63

Abeysekara, N., and Bhattacharyya, M.K. (2014) Analyses of the xylem sap proteomes identified candidate Fusarium virguliforme proteinacious toxins. PLOS One, 9 (5) e93667.

  
62

Cianzio, S.R., Bhattacharyya, M.K., Swaminathan, S, Westgate, M., Gebhart, G., Rivera-Velez, N, Lundeen, P., VanDerMolen, K. and Prusky. T. (2014) Registration of ‘AR10SDS’ soybean germplasm partially resistant to sudden death syndrome and resistance to soybean cyst nematode. J. Plant Regist. 8:200-210.

  
61

Hughes, T., O’Donnell, K., Rooney, A.P., Stacy, S., Scandiani, M.M., Luque, A., Bhattacharyya, M.K., Huang, X. (2014) Genetic architecture and evolution of the mating type locus in fusaria that cause soybean 3 sudden death syndrome and bean root rot. Mycologia, 106(4) 686-697.

  
60

Srivastava, S.K., Brar, H.K., Fakhoury, A., Bluhm, B.H., Huang, X., and Bhattacharyya, M.K. (2014) The genome sequence of the fungal pathogen Fusarium virguliforme that causes sudden death syndrome in soybean. PLOS One. 9(1):e81832.

  
59

Ott, A., Yang, Y., Bhattacharyya, M.K., Horner, H.T., Palmer, R.G., and Sandhu, S. (2013) Molecular mapping of D1, D2 and ms5 revealed linkage between the cotyledon color locus D2 and the male-sterile locus ms5 in soybean. Plants 2:1-x. doi:10.3390/ plants20x000x.

  
58

Luckew, A.S., Leandro L.F., Bhattacharyya M.K., Nordman D.J., Lightfoot D.A., and Cianzio, S.R. (2013) Usefulness of 10 genomic regions in soybean associated with sudden death syndrome resistance.revealed that the FvTox1 toxin is involved in foliar sudden death syndrome development in soybean. Theor Appl Genet, 126:2391-2403.

  
57

Pudake, R.N., Sahu, B.B., Swaminathan, S., Leandro, L.F., and Bhattacharyya, M.K. (2013) Investigation of the Fusarium virguliforme fvtox1 mutants revealed that the FvTox1 toxin is involved in foliar sudden death syndrome development in soybean. Current Genetics, 59:107-117.

  
56

Geiser, D.M., Aoki, T.,Bacon, C.W., Baker, S.E., Bhattacharyya, M.K. et al. (2013) One Fungus, One Name:  Defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology,103:400-408.

  
55

Raval, J., Baumbach, J., Ollhoff, A.R., Palmer, R.G., Bhattacharyya, M.K., and Sandhu, D. (2012) A candidate male-fertility female-fertility gene tagged by the soybean endogenous transposon, Tgm9. Funct. Integr. Genomics, DOI 10.1007/s10142-012-0304-1.

  
54

Baumbach, J., Slattery, R.A., Rogers J.P., Narayanan N.N., Xu, M., Palmer, R.G., Bhattacharyya, M.K., and Sandhu, D. (2012) Segregation distortion in a region containing a male-sterility, female-sterility locus in soybean. Plant Science, 195:151-156.

  
53

Sumit, R., Sahu, B.B., Xu, M., Sandhu, D., and Bhattacharyya, M.K. (2012) Arabidopsis nonhost resistance gene PSS1 confers immunity against an oomycete and a fungal pathogen but not a bacterial pathogen that cause diseases in soybean. BMC Plant Biology, 12:62.

  
52Brar H.K. and Bhattacharyya M.K. (2012) Expression of a single chain plant antibody against a phytotoxin enhanced tolerance to sudden death syndrome in soybean. Mol. Plant-Microbe Interact., 25:817-824.
  
51Sahu, B.B., Sumit, R., and Bhattacharyya, M.K. (2012) Sequence based polymorphic (SBP) marker technology for targeted genomic regions: its application in generating a molecular map of the Arabidopsis thaliana genome. BMC Genomics, 13:20.
  
50Yang, H.,Qiao, X., Bhattacharyya, M.K., and Dong, L. (2011) Microfluidic droplet encapsulation of highly motile single zoospores for phenotypic screening of an antioomycete chemical. Biomicrofluidics 5, 044103.
  
49Brar H.K., Swaminathan S., and Bhattacharyya M.K. (2011) The Fusarium virguliforme toxin FvTox1 causes foliar sudden death syndrome-like symptoms in soybean. Mol. Plant-Microbe Interact., 24: 1179-1188.
  
48Mbofung, G.C.Y., Fessehaie, A., Bhattacharyya, M.K., and Leandro, L.F.S. (2011) A new Taqman real-time PCR assay for quantification of Fusarium virguliforme in soil. Plant Disease, 95: 1420-1426.
  
47Schmutz, J., Cannon, S.B., Schlueter, J., Ma, J., Hyten, D., Song, Q., Mitros, T., Nelson, W., May, G.D., Gill, N., Peto, M., Goodstein, D., Thelen, J.J., Cheng, J., Sakurai, T., Umezawa, T., Du, J., Bhattacharyya, M.K., Sandhu, D., Grant, D., Joshi, T., Libault, M., Zhang, X-C., Xu, D., Futrell-Griggs, M., Abernathy, B., Hellsten, U., Berry, K., Grimwood, J., Wing, R.A., Cregan, P., Stacey, G., Specht, J., Rokhsar, D. Shoemaker, R.C, and Jackson S.A. (2010) Genome sequence of the paleopolyploid soybean (Glycine max (L.) Merr.). Nature, 463:178-83.
  
46Xu, M., Brar, H., Grosic, S., Palmer, R., and Bhattacharyya, M.K. (2010) Excision of an active CACTA-like transposable element from DFR2 led to variegated flowers in soybean. Genetics, 184:53-63.
  
45Sandhu, D., Tasma, M.I., Frasch, R. and Bhattacharyya, M.K. (2009) Systemic Acquired Resistance in Soybean is regulated by Two Proteins, Orthologous to Arabidopsis NPR1. BMC Plant Biology, 9:105.
 
44Narayanan, N.N., Grosic, S., Tasma, I.M., Grant, D., Shoemaker, R., and Bhattacharyya, M.K. (2009) Identification of candidate signaling genes including regulators of chromosome condensation 1 protein family differentially expressed in the soybean-Phytopthora sojae interaction. Theoretical and Applied Genetics, 118:399-412.
  
43Tasmaa, I. M., Brendel, V., Whitham, S.A., and Bhattacharyya, M.K. (2008) Expression and evolution of the phosphoinositide-specific phospholipase C gene family in Arabidopsis thaliana. Plant Physiology Biochemistry, 46:627-637.
  
42Gao, H. and Bhattacharyya, M.K. (2008) The soybean-Phytophthora resistance locus Rps1-k encompasses coiled coil-nucleotide binding-leucine rich repeat-like genes and repetitive sequences. BMC Plant Biology, 8:29.
  
41Palmer, R. G., Sandhu, D., Curran, D. K. and Bhattacharyya, M. K. (2008) Molecular mapping of 36 Soybean male-sterile, female-sterile mutants. Theoretical and Applied Genetics, 117:711-719.
  
40Sandhu, D., Alt, J.L., Scherder, C.W., Fehr, W.R. and Bhattacharyya, M.K. (2007) Enhanced oleic acid content in the soybean mutant M23 is associated with the deletion in the Fad2-1a gene encoding a fatty acid desaturase. J. Amer. Oil Chem Soc. 84, 229-235.
  
39Cao, Z., Zhang, J.. Li, Y., Xu, X., Liu, G., Bhattacharrya, M.K., Yang, H., and Ren, D. (2007) Preparation of polyclonal antibody specific for AtPLC4, an Arabidopsis phosphatidylinositol-specific phospholipase C in rabbits.Protein Expression and Purification 52, 306-312.
  
38Ji, J., Scott, M.P., and Bhattacharyya, M.K. (2006) Light is essential for degradation of ribulose-1,5-biphosphate carboxylase-oxygenase large subunit during sudden death syndrome development in soybean.. Plant Biology 8, 597-605.
  
37Gao, H., Narayanan, N., Ellison, L., and Bhattacharyya M.K. (2005) Two classes of highly similar coiled coil-nucleotide binding-leucine rich repeat genes isolated from the Rps1-k locus encode Phytophthora resistance in soybean. Mol. Plant-Microbe Interact, 18:1035-1045.
  
36Sandhu, D., Schallock K.G., Rivera-Velez, N., Lundeen, P., Cianzio, S., and Bhattacharyya, M.K. (2005) Soybean Phytophthora resistance gene Rps8 maps closely to the Rps3 region. J. Heredity, 96: 536-541.
  
35Bhattacharyya, M.K., Narayanan, N. N., Gao, H., Salimath, S.S., Santra, D., Ellison, L., Kasuga, T., Liu, Y., Espinosa, B., Marek, L.F., Shoemaker, R.C., Gijzen, M. and Buzzell, R.I. (2005) Identification of a large cluster of coiled coil-nucleotide binding site-leucine rich repeat-type genes from the Rps1 region containing Phytophthora resistance genes in soybean. Theor. Appl. Genet., 111: 75-86.
  
34Sandhu, D., Gao, H., Cianzio, S., and Bhattacharyya, M.K. (2004) Deletion of a Disease Resistance Nucleotide-Binding-Site Leucine-Rich- Repeat-like Sequence Is Associated With the Loss of the Phytophthora Resistance Gene Rps4 in Soybean. Genetics 168: 2157-2167
  
33W-M. Chou, T. Shigaki, C. Dammann, Y-Q. Liu, M. K. Bhattacharyya (2004) Inhibition of Phosphoinositide-Specific Phospholipase C Results in the Induction of Pathogenesis-Related Genes in Soybean. Plant Biol 6: 664-672.
  
32

Xu, X., Cao, Z. Liu, G., Bhattacharrya, M.K., and Ren, D. (2004). Cloning and expression of AtPLC6, a gene encoding a phosphatidylinositol-specific phospholipase C in Arabidopsis thaliana. Chinese Science Bulletin 49:567-573.

  
31Santra, D. K., Sandhu, D., Tai, T., and Bhattacharyya, M. K. (2003) Construction and characterization of a soybean yeast artificial chromosome library and identification of clones for the Rps6 region. Funct. Integr. Genomics, 3:153-159.
  
30Shigaki, T., and Bhattacharyya, M.K. (2002) Nutrients induce an increase in inositol 1,4,5-trisphosphate in soybean cells: Implication for the involvement of phosphoinositide-specific phospholipase C in DNA synthesis.  Plant Biology, 4:53-61.
  
29MacGregor, T, Bhattacharyya, M., Tyler, B., Bhat, R, Schmitthenner, A.F., and Gijzen, M. (2002) Genetic and physical mapping of Avr1a in Phytophthora sojae. Genetics, 160:949-959.
  
28Liu, Y., Dammann, C., and Bhattacharyya, M.K. (2001) The matrix metalloproteinase gene GmMMP2 is activated in response to pathogenic infections in soybean. Plant Physiol., 127:1788-1797.
  
27Shigaki, T. and Bhattacharyya, M.K. (2000) Phosphate induces rapid H2O2 generation in soybean suspension cells. Plant Biology, 2:149-151.
  
26Shigaki, T. and Bhattacharyya, M.K. (2000) Decreased inositol 1,4,5- trisphosphate content in pathogen-challenged soybean cells. MPMI, 13: 563-567.
  
25Salimath, S.S. and Bhattacharyya, M.K. (1999) Generation of a soybean BAC library, and identification of DNA sequences tightly linked to the Rps1-k disease resistance gene. Theoretical and Applied Genetics, 98: 712-720.
  
24

Shigaki, T. and Bhattacharyya, M.K. (1999) Color coding the cell death status of plant suspension cells. BioTechniques, 26: 1060-1062.

  
23Bhattacharyya, M.K., Gonzales, R. A., Kraft, M., and Buzzell R.I. (1997) A copia-like retrotransposon Tgmr closely linked to the Rps1-k allele that confers race specific resistance of soybean to Phytophthora sojae. Plant Mol. Biol., 34: 255-264.
  
22Kasuga, T., Salimath, S.S., Shi, J., Gijzen, M., and Buzzell, R., and Bhattacharyya, M.K. (1997) High resolution genetic and physical mapping of molecular markers linked to the Phytophthora resistance gene Rps1-k in soybean. MPMI, 10: 1035-1044.
  
21Korth, K.L., Stermer, B.A., Bhattacharyya, M.K., and Dixon, R.A. (1997) HMG-CoA reductase gene families that differentially accumulate transcripts in potato tubers are developmentally expressed in floral tissues.. Plant Mol. Biol., 33: 545-551.
  
20Shi, J., Gonzales, R.A. and Bhattacharyya, M.K. (1996) Identification and characterization of an S-Adenosyl-L-methionine: D24-Sterol-C-methyltransferase cDNA from soybean. J. Biol. Chem. 27: 9384-9389.
  
19Gijzen, M., MacGregor, T., Bhattacharyya, M. and Buzzell, R. (1996) Temperature induced susceptibility of soybean isolines carrying different Rps genes. Physiol. Mol. Plant Pathol. 48: 209-215.
  
18Shi, J. and Bhattacharyya, M.K. (1996) A novel plasma membrane-bound thioredoxin from soybean. Plant Mol. Biol. 32:653-662.
  
17Shi, J., Dixon, R.A., Gonzales, R.A., Kjellbom, P. and Bhattacharyya, M.K. (1995) Identification of cDNA clones encoding valosin-containing protein and other plant plasma membrane-associated proteins by a general immunoscreening strategy. Proc. Natl. Acad. Sci. 92: 4457-4461.
  
16

Shi, J., Gonzales, R.A. and Bhattacharyya, M.K. (1995) Characterization of a plasma membrane associated phosphoinositide-specific phospholipase C from soybean. Plant J. 8: 381-390.

  
15

Bhattacharyya, M.K., Paiva, N.L., Dixon, R.A., Korth, K.L., and Stermer, B. A. (1995) Features of the hmg1 subfamily of genes encoding HMG-CoA reductase in potato.  Plant Mol. Biol. 28:1-15.

  
14

Burton, R.A., Bewley, J. D., Smith, A.M., Bhattacharyya, M.K., Tatge, H., Ring, S., Bull, V., Hamilton, W.D.O., and Martin, C. (1995) Starch branching enzymes belonging to distinct enzyme families are differentially expressed during pea  embryo development. Plant J. 7:3-15.

  
13

Bhattacharyya, M.K., Stermer, B.A., and Dixon, R.A. (1994) Reduced variation in transgene expression from a binary vector with selectable markers at the right and left T-DNA borders.  Plant J., 6: 957-968.

 
12

Dry, I., Smith, A.M., Edwards, A., Bhattacharyya, M., Dunn, P., and Martin, C. (1992) Characterization of cDNAs encoding two isoforms of granule-bound starch synthase which show differential expression in developing storage organs. Plant J., 2: 193-202.

  
11

Bhattacharyya, M.K., Smith, A.M., Ellis, N.T.H., Hedley, C., and Martin, C. (1990) The wrinkled-seed character of pea described by Mendel is caused by a transposon-like insertion in a gene encoding starch-branching enzyme.   Cell, 6: 115-122.

  
10

Ward, E.W.B., Cahill, D.M., and Bhattacharyya, M.K. (1989) Early cytological differences between compatible and incompatible interactions of soybeans with Phytophthora megasperma f. sp. glycinea. Physiol. Mol. Plant Pathol. 34:267-283.

  
9

Ward, E.W.B., Cahill, D.M., and Bhattacharyya, M.K. (1989) Abscisic acid suppression of phenylalanine ammonia-lyase activity and mRNA and resistance of soybeans to Phytophthora  megasperma  f. sp. glycinea. 

 
8

Bhattacharyya, M.K., and Ward, E.W.B. (1987) Phenylalanine ammonia-lyase activity in soybean hypocotyls and leaves following infection with Phytophthora megasperma f. sp. glycinea. Can. J. Bot. 66:18-23.

  
7

Bhattacharyya, M.K., and Ward, E.W.B. (1987) Biosynthesis and metabolism of glyceollin I in soybean hypocotyls following wounding or inoculation with Phytophthora megasperma f. sp. glycinea. Physiol. Mol. Plant Pathol. 31:387-405.

6

Bhattacharyya, M.K., and Ward, E.W.B. (1987) Temperature-induced susceptibility of soybeans to Phytophthora  megasperma f. sp. glycinea: phenylalanine ammonia-lyase and glyceollin in the host; growth and glyceollin I sensitivity of the pathogen.  Physiol. Mol. Plant Pathol. 31:407-419.

 
5

Bhattacharyya, M.K., and Ward, E.W.B. (1986) Expression of gene-specific and age-related resistance and the accumulation of glyceollin in soybean leaves infected with Phytophthora  megasperma f. sp. glycinea. Physiol. Mol. Plant Pathol. 29:105-113.

  
4

Bhattacharyya, M.K., and Ward, E.W.B. (1986) Resistance, susceptibility and accumulation of glyceollin I-III in soybeans inoculated with Phytophthora megasperma f. sp. glycinea. Physiol. Mol. Plant Pathol. 29:227-237.

  
3

Bhattacharyya, M.K., and Ward, E.W.B. (1985) Differential sensitivity of Phytophthora megasperma f. sp. glycinea isolates to glyceollin isomers. Physiol. Plant Pathol. 27:299-310.

  
2

Bhattacharyya, M.K., Surjan, S., and Nandpuri, K.S. (1981) Path-coefficient and discriminant function in tomato. JASS 2 & 3:7-10.

 
1

Saikia, A.K., Phukan, P.N., and Bhattacharyya, M.K. (1980) Reaction of tomato cultivars to root knot nematode. J. Res. Assam Agril. Univ. 1:217-218.